5. The fact of human consciousness
6. The joy we experience in an encounter of beauty
7. The fact that we believe our reason to be reliable
8. Our sense that we have free will
One quality of the world that sits better on the assumption of theism than atheism, particularly atheistic materialism, is the existence of human consciousness.
How does it happen, for instance, that mere matter can produce qualia (e.g. the sensation of red or pain or the taste of sweet)? How do electrochemical reactions in our neurons produce a value, a doubt, gratitude, regret, expectation, or frustration, boredom, or disappointment? How does material substance produce forgiveness, resentment, or wishes, hopes, and desires? How does it appreciate (e.g. beauty, music, or a book)? How does it want, worry, or have intentions?
How do the chemicals that make up the matter of the brain happen to make that matter aware of itself and its surroundings? How does matter come to hold beliefs or understand what it believes? How does pure matter impose a meaning on a text that one reads or a lecture to which one listens?
These are vexing questions for a materialist view of the world. It may be that if we put the proper chemicals in a flask under the appropriate conditions the flask would become conscious or feel pain, but we have no idea how it could do so, and the belief that it could is simply an article of materialist faith.
In other words, on the assumption that human beings are solely material beings consciousness is inexplicable. After all, a robot could function pretty well without experiencing any conscious phenomena at all, so why did consciousness evolve in humans?
The existence of consciousness suggests that material substance is not the only constituent of reality, which may be one reason why some materialists (called eliminative materialists) pretty much deny the existence of consciousness.
If there is, in addition to the material substance in our world, also mental substance, how could such a thing have arisen in a purely physical/material universe? The hypothesis that there is an intelligent Creator of the universe who is itself pure mind presents us with an explanation where naturalism must just shrug its shoulders.
Related to the matter of consciousness is the question of beauty, or more precisely, why it is that gazing at, or listening to, something beautiful should fill us with delight, or even rapture. It's possible, I suppose, to formulate some convoluted ad hoc hypothesis in terms of purposeless physical forces acting over billions of years on dozens of fortuitous mutations to produce response mechanisms to certain stimuli in our neuronal architecture. But why?
Why should a sunset fill us with wonder and a mountain range fill us with awe? Why and how would blind, unintentional processes produce such responses? What urgency would such seemingly gratuitous responses have in the struggle for survival that the whole panoply of mutations and selective pressures would be brought to bear to cultivate them?
A simpler explanation for such phenomena, perhaps, is that our encounters with beauty, like our encounters with good, are intimations of God. Beauty is one means by which God reveals Himself to us in the world. Our encounters with beauty are glimpses He gives us of Himself, and the delight we feel in them is a prelude to heaven.
Another aspect of the world that is better explained in terms of a theistic rather than an atheistic or naturalistic worldview is our sense that reason is a trustworthy guide to truth. If matter, energy, and physical forces like gravity are all there is then everything is ultimately reducible to material, non-rational particles. If so, our beliefs are just brain states that can be completely explained in terms of non-rational chemical reactions, but any belief that is fully explicable in terms of non-rational causes is not likely itself to be rational.
Therefore, if materialism is true, none of our beliefs, especially metaphysical beliefs, can be trusted to be rational or true, reason itself is a non-rational illusion, and the reliability of scientific investigation, like "truth," is chimerical. Thus the atheistic materialist is in the awkward position of having no rational basis for believing that materialism, or anything else, is true.
As Stephen Pinker of MIT has said, "Our brains were shaped [by evolution] for fitness, not for truth." Only if our reason is an endowment from an omniscient, good Creator do we have actual warrant for placing confidence in it.
We may, if we don't believe that there is a Creator, decide to trust reason as an act of faith, but it's very difficult to justify the decision to do so since any such justification must itself rely upon rational argument. And, of course, employing reason to argue on behalf of its own trustworthiness begs the question.
The next characteristic of human beings that makes more sense given the existence of God than given the truth of atheism is our sense that we are free to make genuine choices and that the future is open. In the absence of God our sense that we are free to choose and are responsible for those choices is problematic.
In a Godless world we are just a collection of physical particles, and ultimately physical particles have no freedom, they simply move according to physical laws. There is no free will, there is only an inexorable determinism. At any given moment there is only one possible future, and our belief that we can freely create a future is pure sophistry and illusion.
Thus an atheist who faults me for writing this post is acting inconsistently with his own assumptions. If there is no God I am compelled to write and express these ideas by causes beyond my control and for which I am not responsible. Indeed, if there is no God, it's hard to see how anyone could ultimately be responsible for anything they do.